3D structure

PDB id
2UUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
2UUC|1|A|A|532, 2UUC|1|A|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2UUC_021 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1627
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

2UUC|1|A|G|515
2UUC|1|A|U|516
2UUC|1|A|G|517
2UUC|1|A|C|518
2UUC|1|A|C|519
2UUC|1|A|A|520
2UUC|1|A|G|521
*
2UUC|1|A|C|528
2UUC|1|A|G|529
2UUC|1|A|G|530
2UUC|1|A|U|531
2UUC|1|A|A|532
2UUC|1|A|A|533
2UUC|1|A|U|534
2UUC|1|A|A|535
2UUC|1|A|C|536

Current chains

Chain A
16S RRNA

Nearby chains

Chain C
30S RIBOSOMAL PROTEIN S3
Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12
Chain X
5'-R(*GP*UP*AP*AP*AP*AP)-3'
Chain Y
5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2126 s