IL_2UUC_031

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

2UUC|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUC_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0724

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

2UUC|1|A|G|683
2UUC|1|A|A|684
2UUC|1|A|G|685
2UUC|1|A|U|686
2UUC|1|A|A|687
2UUC|1|A|G|688
*
2UUC|1|A|C|699
2UUC|1|A|G|700
2UUC|1|A|C|701
2UUC|1|A|A|702
2UUC|1|A|G|703
2UUC|1|A|A|704
2UUC|1|A|U|705
2UUC|1|A|A|706
2UUC|1|A|C|707

Current chains

Chain A

16S RRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain R

30S RIBOSOMAL PROTEIN S18