IL_2UXB_060
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CACG*CGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXB_060 not in the Motif Atlas
- Geometric match to IL_8CRE_469
- Geometric discrepancy: 0.3641
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
2UXB|1|A|C|1407
2UXB|1|A|A|1408
2UXB|1|A|C|1409
2UXB|1|A|G|1410
*
2UXB|1|A|C|1490
2UXB|1|A|G|1491
2UXB|1|A|A|1492
2UXB|1|A|A|1493
2UXB|1|A|G|1494
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain L
- RIBOSOMAL PROTEIN S12
- Chain X
- A-SITE MESSENGER RNA FRAGMENT GGGU
- Chain Y
- ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC
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