IL_2UXB_067
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGG,CCC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXB_067 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.2261
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
2UXB|1|X|G|1
2UXB|1|X|G|2
2UXB|1|X|G|3
*
2UXB|1|Y|C|35
2UXB|1|Y|C|36
2UXB|1|Y|C|37
Current chains
- Chain X
- A-SITE MESSENGER RNA FRAGMENT GGGU
- Chain Y
- ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain L
- RIBOSOMAL PROTEIN S12
Coloring options: