IL_2UXC_017

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCG*CGGG

Length

8 nucleotides

Bulged bases

2UXC|1|A|C|443

QA status

Self-complementary: CCCG,CGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_017 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.2046

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

2UXC|1|A|C|442
2UXC|1|A|C|443
2UXC|1|A|C|444
2UXC|1|A|G|445
*
2UXC|1|A|C|489
2UXC|1|A|G|490
2UXC|1|A|G|491
2UXC|1|A|G|492

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN S4