IL_2UXC_046

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_046 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.1631

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

2UXC|1|A|C|1128
2UXC|1|A|C|1129
2UXC|1|A|A|1130
2UXC|1|A|G|1131
2UXC|1|A|C|1132
*
2UXC|1|A|G|1142
2UXC|1|A|G|1143

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9

Chain J

RIBOSOMAL PROTEIN S10