IL_2UXC_061

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

2UXC|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_061 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1536

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

2UXC|1|A|C|1440
2UXC|1|A|G|1441
2UXC|1|A|G|1442
2UXC|1|A|G|1443
2UXC|1|A|A|1446
2UXC|1|A|G|1447
*
2UXC|1|A|C|1459
2UXC|1|A|A|1460
2UXC|1|A|G|1461

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20