3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
2UXD|1|A|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2UXD_022 not in the Motif Atlas
Homologous match to IL_4LFB_022
Geometric discrepancy: 0.0726
The information below is about IL_4LFB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

2UXD|1|A|C|569
2UXD|1|A|G|570
2UXD|1|A|U|571
2UXD|1|A|A|572
2UXD|1|A|A|573
2UXD|1|A|A|574
2UXD|1|A|G|575
*
2UXD|1|A|C|880
2UXD|1|A|G|881

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain E
RIBOSOMAL PROTEIN S5
Chain G
RIBOSOMAL PROTEIN S7
Chain L
RIBOSOMAL PROTEIN S12
Chain Q
RIBOSOMAL PROTEIN S17

Coloring options:


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