3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
2UXD|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2UXD_031 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0866
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

2UXD|1|A|G|683
2UXD|1|A|A|684
2UXD|1|A|G|685
2UXD|1|A|U|686
2UXD|1|A|A|687
2UXD|1|A|G|688
*
2UXD|1|A|C|699
2UXD|1|A|G|700
2UXD|1|A|C|701
2UXD|1|A|A|702
2UXD|1|A|G|703
2UXD|1|A|A|704
2UXD|1|A|U|705
2UXD|1|A|A|706
2UXD|1|A|C|707

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain K
RIBOSOMAL PROTEIN S11

Coloring options:


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