IL_2UXD_031

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

2UXD|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0866

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

2UXD|1|A|G|683
2UXD|1|A|A|684
2UXD|1|A|G|685
2UXD|1|A|U|686
2UXD|1|A|A|687
2UXD|1|A|G|688
*
2UXD|1|A|C|699
2UXD|1|A|G|700
2UXD|1|A|C|701
2UXD|1|A|A|702
2UXD|1|A|G|703
2UXD|1|A|A|704
2UXD|1|A|U|705
2UXD|1|A|A|706
2UXD|1|A|C|707

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain K

RIBOSOMAL PROTEIN S11