3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCAGC*GG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2UXD_045 not in the Motif Atlas
Geometric match to IL_4LFB_049
Geometric discrepancy: 0.2233
The information below is about IL_4LFB_049
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

2UXD|1|A|C|1128
2UXD|1|A|C|1129
2UXD|1|A|A|1130
2UXD|1|A|G|1131
2UXD|1|A|C|1132
*
2UXD|1|A|G|1142
2UXD|1|A|G|1143

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain I
RIBOSOMAL PROTEIN S9
Chain J
RIBOSOMAL PROTEIN S10

Coloring options:


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