IL_2UXD_052

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

2UXD|1|A|C|1400, 2UXD|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_052 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2056

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

2UXD|1|A|C|1399
2UXD|1|A|C|1400
2UXD|1|A|G|1401
*
2UXD|1|A|C|1501
2UXD|1|A|A|1502
2UXD|1|A|A|1503
2UXD|1|A|G|1504

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain X

ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG