IL_2UXD_053

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_053 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1012

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2UXD|1|A|G|1401
2UXD|1|A|C|1402
2UXD|1|A|C|1403
2UXD|1|A|C|1404
*
2UXD|1|A|G|1497
2UXD|1|A|U|1498
2UXD|1|A|A|1499
2UXD|1|A|A|1500
2UXD|1|A|C|1501

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain X

ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG