IL_2VPL_003

3D structure

PDB id

2VPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the complex between the first domain of L1 protein from Thermus thermophilus and mRNA from Methanococcus jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2VPL_003 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1362

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

2VPL|1|D|G|3
2VPL|1|D|A|4
2VPL|1|D|G|5
*
2VPL|1|D|C|45
2VPL|1|D|U|46
2VPL|1|D|C|47

Current chains

Chain D

FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L1