IL_2VQE_021
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 2VQE|1|A|A|532, 2VQE|1|A|U|534, 2VQE|1|A|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQE_021 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1789
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
2VQE|1|A|G|515
2VQE|1|A|U|516
2VQE|1|A|G|517
2VQE|1|A|C|518
2VQE|1|A|C|519
2VQE|1|A|A|520
2VQE|1|A|G|521
*
2VQE|1|A|C|528
2VQE|1|A|G|529
2VQE|1|A|G|530
2VQE|1|A|U|531
2VQE|1|A|A|532
2VQE|1|A|A|533
2VQE|1|A|U|534
2VQE|1|A|A|535
2VQE|1|A|C|536
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain X
- 5'-R(*UP*UP*AP*AP*AP*AP)-3'
- Chain Y
- 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3'
Coloring options: