IL_2VQE_033
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQE_033 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.0426
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
2VQE|1|A|C|779
2VQE|1|A|A|780
2VQE|1|A|A|781
2VQE|1|A|A|782
2VQE|1|A|C|783
*
2VQE|1|A|G|799
2VQE|1|A|G|800
2VQE|1|A|U|801
2VQE|1|A|A|802
2VQE|1|A|G|803
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain K
- 30S RIBOSOMAL PROTEIN S11
Coloring options: