IL_2VQE_037

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

2VQE|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2VQE_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.0808

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

2VQE|1|A|G|933
2VQE|1|A|C|934
2VQE|1|A|A|935
*
2VQE|1|A|U|1380
2VQE|1|A|U|1381
2VQE|1|A|C|1382
2VQE|1|A|C|1383
2VQE|1|A|C|1384

Current chains

Chain A

16S RRNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9