IL_2VQE_059

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

2VQE|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2VQE_059 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1425

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93811.1

Basepair signature

cWW-tHS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

2VQE|1|A|C|1440
2VQE|1|A|G|1441
2VQE|1|A|G|1442
2VQE|1|A|G|1443
2VQE|1|A|A|1446
2VQE|1|A|G|1447
*
2VQE|1|A|C|1459
2VQE|1|A|A|1460
2VQE|1|A|G|1461

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20