Motif IL_34117.1 Version IL_34117.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_440 | 8P9A | 0.7871 | 2 | Minor groove platform with extra cWW (H) | sR | SSU rRNA | U | 1430 | C | 1431 | G | 1433 | U | 1434 | A | 1436 | * | U | 1276 | G | 1277 | G | 1278 | cWW | tHS | ncWWa | cWW | ||
| 2 | IL_8GLP_260 | 8GLP | 0.7792 | 2 | Minor groove platform with extra cWW (H) | S2 | SSU rRNA | U | 1492 | C | 1493 | G | 1495 | U | 1496 | A | 1498 | * | U | 1333 | G | 1334 | G | 1335 | cWW | ntHS | ncBW | cWW | ||
| 3 | IL_5UNE_002 | 5UNE | 0.5443 | 1 | Isolated basepair with bulged bases | B+A | RNA (47-MER) | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | * | U | 10 | G | 11 | G | 12 | cWW | ntSH | cWW | |||
| 4 | IL_4LFB_064 | 4LFB | 0.4831 | 1 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW | ||||
| 5 | IL_1XJR_001 | 1XJR | 0.5504 | 0 | Isolated basepair with bulged bases | A | s2m RNA | C | 9 | C | 10 | G | 11 | A | 12 | G | 13 | * | C | 39 | A | 40 | G | 41 | cWW | cWW | ||||
| 6 | IL_4WF9_012 | 4WF9 | 0.4399 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWS | ncWW | ||
| 7 | IL_4GXY_009 | 4GXY | 0.0000 | 0 | Major groove minor groove platform with extra cWW | A | Cobalamin riboswitch | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | * | C | 105 | A | 106 | C | 107 | cWW | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUGUGA*UGG | 2 |
| CGGAAA*UGG | 1 |
| CGGGAG*CAG | 1 |
| CCGAG*CAG | 1 |
| GGAUC*GAC | 1 |
| GGAAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUG*G | 2 |
| GGAA*G | 1 |
| GGGA*A | 1 |
| CGA*A | 1 |
| GAU*A | 1 |
| GAA*A | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated basepair with bulged bases (2)
- Major groove minor groove platform with extra cWW (2)
- Minor groove platform with extra cWW (H) (2)
- (1)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.14 | Avg 0.54 | Max 0.88
Coloring options: