IL_2VQF_009
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 2VQF|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQF_009 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.0529
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
2VQF|1|A|G|148
2VQF|1|A|A|149
2VQF|1|A|C|150
2VQF|1|A|A|151
2VQF|1|A|A|152
2VQF|1|A|C|153
*
2VQF|1|A|G|168
2VQF|1|A|C|169
2VQF|1|A|U|170
2VQF|1|A|A|171
2VQF|1|A|A|172
2VQF|1|A|U|173
2VQF|1|A|C|174
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: