IL_2VQF_011
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 2VQF|1|A|U|244, 2VQF|1|A|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQF_011 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0568
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
2VQF|1|A|C|242
2VQF|1|A|A|243
2VQF|1|A|U|244
2VQF|1|A|C|245
2VQF|1|A|A|246
2VQF|1|A|G|247
*
2VQF|1|A|C|277
2VQF|1|A|G|278
2VQF|1|A|A|279
2VQF|1|A|C|280
2VQF|1|A|G|281
2VQF|1|A|A|282
2VQF|1|A|C|283
2VQF|1|A|G|284
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: