IL_2VQF_022
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 2VQF|1|A|A|572
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQF_022 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.0506
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
2VQF|1|A|C|569
2VQF|1|A|G|570
2VQF|1|A|U|571
2VQF|1|A|A|572
2VQF|1|A|A|573
2VQF|1|A|A|574
2VQF|1|A|G|575
*
2VQF|1|A|C|880
2VQF|1|A|G|881
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain E
- 30S RIBOSOMAL PROTEIN S5
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
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