IL_2WW9_004

3D structure

PDB id

2WW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

2WW9|1|F|G|1672

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2WW9_004 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1324

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

2WW9|1|F|U|1659
2WW9|1|F|C|1660
2WW9|1|F|A|1661
2WW9|1|F|A|1662
2WW9|1|F|C|1663
*
2WW9|1|F|G|1671
2WW9|1|F|G|1672
2WW9|1|F|A|1673

Current chains

Chain F

25S RRNA

Nearby chains

Chain E

25S RRNA

Chain I

60S RIBOSOMAL PROTEIN L17-A

Chain J

60S RIBOSOMAL PROTEIN L19