IL_2WWA_001

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2WWA_001 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1668

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

2WWA|1|D|C|45
2WWA|1|D|G|46
2WWA|1|D|C|47
*
2WWA|1|D|G|56
2WWA|1|D|C|57
2WWA|1|D|G|58

Current chains

Chain D

25S RRNA

Nearby chains

Chain K

60S RIBOSOMAL PROTEIN L25

Chain N

60S RIBOSOMAL PROTEIN L35

Chain O

60S RIBOSOMAL PROTEIN L39