IL_2WWA_005

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

2WWA|1|D|C|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2WWA_005 not in the Motif Atlas

Geometric match to IL_7QR8_008

Geometric discrepancy: 0.212

The information below is about IL_7QR8_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

2WWA|1|D|U|64
2WWA|1|D|A|65
2WWA|1|D|A|66
*
2WWA|1|D|U|93
2WWA|1|D|C|94
2WWA|1|D|G|95
2WWA|1|D|A|96

Current chains

Chain D

25S RRNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN L26-A

Chain N

60S RIBOSOMAL PROTEIN L35