IL_2YKR_002
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- AG*CAU
- Length
- 5 nucleotides
- Bulged bases
- 2YKR|1|A|A|397
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_002 not in the Motif Atlas
- Homologous match to IL_5J7L_002
- Geometric discrepancy: 0.5157
- The information below is about IL_5J7L_002
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
2YKR|1|A|A|44
2YKR|1|A|G|45
*
2YKR|1|A|C|396
2YKR|1|A|A|397
2YKR|1|A|U|398
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain P
- 30S RIBOSOMAL PROTEIN S16
Coloring options: