IL_2YKR_025

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_025 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.4056

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

2YKR|1|A|U|409
2YKR|1|A|G|410
2YKR|1|A|A|411
2YKR|1|A|A|412
2YKR|1|A|G|413
2YKR|1|A|A|414
2YKR|1|A|A|415
2YKR|1|A|G|416
*
2YKR|1|A|U|427
2YKR|1|A|G|428
2YKR|1|A|U|429
2YKR|1|A|A|430
2YKR|1|A|A|431
2YKR|1|A|A|432
2YKR|1|A|G|433

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4