IL_2YKR_031

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

2YKR|1|A|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|G|515
2YKR|1|A|U|516
2YKR|1|A|G|517
2YKR|1|A|C|518
2YKR|1|A|C|519
2YKR|1|A|A|520
2YKR|1|A|G|521
*
2YKR|1|A|C|528
2YKR|1|A|G|529
2YKR|1|A|G|530
2YKR|1|A|U|531
2YKR|1|A|A|532
2YKR|1|A|A|533
2YKR|1|A|U|534
2YKR|1|A|A|535
2YKR|1|A|C|536

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain L

30S RIBOSOMAL PROTEIN S12

Chain W

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA