IL_2YKR_045

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_045 not in the Motif Atlas

Geometric match to IL_5B2P_001

Geometric discrepancy: 0.3045

The information below is about IL_5B2P_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

2YKR|1|A|G|769
2YKR|1|A|C|770
2YKR|1|A|G|771
*
2YKR|1|A|C|808
2YKR|1|A|G|809
2YKR|1|A|C|810

Current chains

Chain A

16S RRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain O

30S RIBOSOMAL PROTEIN S15