IL_2YKR_054

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_054 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2423

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

2YKR|1|A|A|949
2YKR|1|A|U|950
2YKR|1|A|G|951
*
2YKR|1|A|C|1230
2YKR|1|A|G|1231
2YKR|1|A|U|1232

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain W

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA