IL_2YKR_058

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

2YKR|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_058 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.4592

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

2YKR|1|A|G|1048
2YKR|1|A|U|1049
2YKR|1|A|G|1050
*
2YKR|1|A|C|1208
2YKR|1|A|C|1209

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain N

30S RIBOSOMAL PROTEIN S14