IL_2YKR_059
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UGCAUGG*UCAUCAUG
- Length
- 15 nucleotides
- Bulged bases
- 2YKR|1|A|C|1054, 2YKR|1|A|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_059 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.3983
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
2YKR|1|A|U|1052
2YKR|1|A|G|1053
2YKR|1|A|C|1054
2YKR|1|A|A|1055
2YKR|1|A|U|1056
2YKR|1|A|G|1057
2YKR|1|A|G|1058
*
2YKR|1|A|U|1199
2YKR|1|A|C|1200
2YKR|1|A|A|1201
2YKR|1|A|U|1202
2YKR|1|A|C|1203
2YKR|1|A|A|1204
2YKR|1|A|U|1205
2YKR|1|A|G|1206
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
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