IL_2YKR_061

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_061 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.3388

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

2YKR|1|A|C|1069
2YKR|1|A|U|1070
2YKR|1|A|C|1071
*
2YKR|1|A|G|1104
2YKR|1|A|A|1105
2YKR|1|A|G|1106

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain C

30S RIBOSOMAL PROTEIN S3

Chain E

30S RIBOSOMAL PROTEIN S5