IL_2YKR_069
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_069 not in the Motif Atlas
- Homologous match to IL_5J7L_057
- Geometric discrepancy: 0.3083
- The information below is about IL_5J7L_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
2YKR|1|A|C|1303
2YKR|1|A|G|1304
2YKR|1|A|G|1305
2YKR|1|A|A|1306
2YKR|1|A|U|1307
2YKR|1|A|U|1308
*
2YKR|1|A|A|1329
2YKR|1|A|U|1330
2YKR|1|A|G|1331
2YKR|1|A|A|1332
2YKR|1|A|A|1333
2YKR|1|A|G|1334
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain M
- 30S RIBOSOMAL PROTEIN S13
Coloring options: