IL_2YKR_077
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAUGG*CUGGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_077 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3861
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
2YKR|1|A|C|1412
2YKR|1|A|A|1413
2YKR|1|A|U|1414
2YKR|1|A|G|1415
2YKR|1|A|G|1416
*
2YKR|1|A|C|1484
2YKR|1|A|U|1485
2YKR|1|A|G|1486
2YKR|1|A|G|1487
2YKR|1|A|G|1488
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain W
- PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA
Coloring options: