IL_2YKR_085

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

AAAAGAAGUA*UACCACUUU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|A|1428
2YKR|1|A|A|1429
2YKR|1|A|A|1430
2YKR|1|A|A|1431
2YKR|1|A|G|1432
2YKR|1|A|A|1433
2YKR|1|A|A|1434
2YKR|1|A|G|1435
2YKR|1|A|U|1436
2YKR|1|A|A|1437
*
2YKR|1|A|U|1464
2YKR|1|A|A|1465
2YKR|1|A|C|1466
2YKR|1|A|C|1467
2YKR|1|A|A|1468
2YKR|1|A|C|1469
2YKR|1|A|U|1470
2YKR|1|A|U|1471
2YKR|1|A|U|1472

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20