IL_2YKR_093
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UGAAGAAGG*UUGUAAAG
- Length
- 17 nucleotides
- Bulged bases
- 2YKR|1|A|A|412, 2YKR|1|A|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_093 not in the Motif Atlas
- Homologous match to IL_6CZR_129
- Geometric discrepancy: 0.5036
- The information below is about IL_6CZR_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58819.1
- Basepair signature
- cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
2YKR|1|A|U|409
2YKR|1|A|G|410
2YKR|1|A|A|411
2YKR|1|A|A|412
2YKR|1|A|G|413
2YKR|1|A|A|414
2YKR|1|A|A|415
2YKR|1|A|G|416
2YKR|1|A|G|417
*
2YKR|1|A|U|426
2YKR|1|A|U|427
2YKR|1|A|G|428
2YKR|1|A|U|429
2YKR|1|A|A|430
2YKR|1|A|A|431
2YKR|1|A|A|432
2YKR|1|A|G|433
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
Coloring options: