IL_2YKR_094

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGAGGAAGGGAGUA*UGCUCAUUGACGUUAC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|G|446
2YKR|1|A|G|447
2YKR|1|A|A|448
2YKR|1|A|G|449
2YKR|1|A|G|450
2YKR|1|A|A|451
2YKR|1|A|A|452
2YKR|1|A|G|453
2YKR|1|A|G|454
2YKR|1|A|G|455
2YKR|1|A|A|456
2YKR|1|A|G|457
2YKR|1|A|U|458
2YKR|1|A|A|459
*
2YKR|1|A|U|473
2YKR|1|A|G|474
2YKR|1|A|C|475
2YKR|1|A|U|476
2YKR|1|A|C|477
2YKR|1|A|A|478
2YKR|1|A|U|479
2YKR|1|A|U|480
2YKR|1|A|G|481
2YKR|1|A|A|482
2YKR|1|A|C|483
2YKR|1|A|G|484
2YKR|1|A|U|485
2YKR|1|A|U|486
2YKR|1|A|A|487
2YKR|1|A|C|488

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain P

30S RIBOSOMAL PROTEIN S16