IL_2YKR_095

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GCGUAAAG*CGC

Length

11 nucleotides

Bulged bases

2YKR|1|A|A|572, 2YKR|1|A|A|573

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|G|568
2YKR|1|A|C|569
2YKR|1|A|G|570
2YKR|1|A|U|571
2YKR|1|A|A|572
2YKR|1|A|A|573
2YKR|1|A|A|574
2YKR|1|A|G|575
*
2YKR|1|A|C|880
2YKR|1|A|G|881
2YKR|1|A|C|882

Current chains

Chain A

16S RRNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5

Chain H

30S RIBOSOMAL PROTEIN S8

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain U

30S RIBOSOMAL PROTEIN S21