IL_2YKR_101

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UACAAAGAG*CUCAUAAAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|U|1247
2YKR|1|A|A|1248
2YKR|1|A|C|1249
2YKR|1|A|A|1250
2YKR|1|A|A|1251
2YKR|1|A|A|1252
2YKR|1|A|G|1253
2YKR|1|A|A|1254
2YKR|1|A|G|1255
*
2YKR|1|A|C|1282
2YKR|1|A|U|1283
2YKR|1|A|C|1284
2YKR|1|A|A|1285
2YKR|1|A|U|1286
2YKR|1|A|A|1287
2YKR|1|A|A|1288
2YKR|1|A|A|1289
2YKR|1|A|G|1290

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14