IL_2YKR_102
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GUCAC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 2YKR|1|A|A|1493
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_102 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5942
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
2YKR|1|A|G|1405
2YKR|1|A|U|1406
2YKR|1|A|C|1407
2YKR|1|A|A|1408
2YKR|1|A|C|1409
*
2YKR|1|A|G|1491
2YKR|1|A|A|1492
2YKR|1|A|A|1493
2YKR|1|A|G|1494
2YKR|1|A|U|1495
2YKR|1|A|C|1496
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain W
- PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA
Coloring options: