IL_2YKR_109

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|U|605
2YKR|1|A|G|606
2YKR|1|A|A|607
2YKR|1|A|A|608
2YKR|1|A|A|609
2YKR|1|A|U|610
2YKR|1|A|C|611
2YKR|1|A|C|612
*
2YKR|1|A|G|628
2YKR|1|A|A|629
2YKR|1|A|A|630
2YKR|1|A|C|631
2YKR|1|A|U|632
2YKR|1|A|G|633

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain H

30S RIBOSOMAL PROTEIN S8

Chain P

30S RIBOSOMAL PROTEIN S16

Chain Q

30S RIBOSOMAL PROTEIN S17