IL_2ZJP_001
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_001 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.1041
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
2ZJP|1|X|G|24
2ZJP|1|X|U|25
2ZJP|1|X|G|26
2ZJP|1|X|G|27
2ZJP|1|X|A|28
2ZJP|1|X|U|29
2ZJP|1|X|G|30
*
2ZJP|1|X|C|520
2ZJP|1|X|U|521
2ZJP|1|X|G|522
2ZJP|1|X|A|523
2ZJP|1|X|A|524
2ZJP|1|X|A|525
2ZJP|1|X|C|526
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain N
- 50S RIBOSOMAL PROTEIN L20
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: