IL_2ZJP_007

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.0968

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2ZJP|1|X|G|215
2ZJP|1|X|U|216
2ZJP|1|X|U|217
2ZJP|1|X|A|218
2ZJP|1|X|G|219
2ZJP|1|X|U|220
2ZJP|1|X|A|221
2ZJP|1|X|G|222
*
2ZJP|1|X|C|230
2ZJP|1|X|G|231
2ZJP|1|X|A|232
2ZJP|1|X|A|233
2ZJP|1|X|C|234
2ZJP|1|X|C|235
2ZJP|1|X|C|236

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain I

50S RIBOSOMAL PROTEIN L15