IL_2ZJP_008

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_008 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.465

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

2ZJP|1|X|C|303
2ZJP|1|X|A|304
2ZJP|1|X|A|305
2ZJP|1|X|G|306
*
2ZJP|1|X|C|354
2ZJP|1|X|G|355
2ZJP|1|X|A|356
2ZJP|1|X|A|357
2ZJP|1|X|C|358
2ZJP|1|X|G|359

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L24