IL_2ZJP_009

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

2ZJP|1|X|G|514, 2ZJP|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_009 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.089

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

2ZJP|1|X|G|492
2ZJP|1|X|A|493
2ZJP|1|X|A|494
2ZJP|1|X|C|495
*
2ZJP|1|X|G|506
2ZJP|1|X|A|507
2ZJP|1|X|G|508
2ZJP|1|X|U|509
2ZJP|1|X|G|510
2ZJP|1|X|A|511
2ZJP|1|X|A|512
2ZJP|1|X|A|513
2ZJP|1|X|G|514
2ZJP|1|X|A|515
2ZJP|1|X|G|516
2ZJP|1|X|A|517
2ZJP|1|X|A|518
2ZJP|1|X|C|519

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24