IL_2ZJP_017

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_017 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1499

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2ZJP|1|X|U|716
2ZJP|1|X|G|717
2ZJP|1|X|A|718
2ZJP|1|X|A|719
2ZJP|1|X|A|720
2ZJP|1|X|C|721
*
2ZJP|1|X|G|736
2ZJP|1|X|C|737
2ZJP|1|X|G|738
2ZJP|1|X|G|739
2ZJP|1|X|A|740
2ZJP|1|X|G|741

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains