IL_2ZJP_037
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUG*UGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_037 not in the Motif Atlas
- Geometric match to IL_1YZ9_002
- Geometric discrepancy: 0.1352
- The information below is about IL_1YZ9_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
2ZJP|1|X|G|1045
2ZJP|1|X|U|1046
2ZJP|1|X|G|1047
*
2ZJP|1|X|U|1130
2ZJP|1|X|G|1131
2ZJP|1|X|C|1132
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain E
- 50S RIBOSOMAL PROTEIN L6
- Chain J
- 50S RIBOSOMAL PROTEIN L16
- Chain S
- 50S RIBOSOMAL PROTEIN L25
Coloring options: