IL_2ZJP_040

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

2ZJP|1|X|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_040 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3396

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

2ZJP|1|X|G|1098
2ZJP|1|X|A|1099
2ZJP|1|X|G|1100
2ZJP|1|X|U|1101
2ZJP|1|X|G|1102
*
2ZJP|1|X|C|1111
2ZJP|1|X|U|1112
2ZJP|1|X|C|1113

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain F

50S RIBOSOMAL PROTEIN L11