IL_2ZJP_042

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

2ZJP|1|X|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_042 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.129

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

2ZJP|1|X|C|1210
2ZJP|1|X|G|1211
2ZJP|1|X|U|1212
*
2ZJP|1|X|A|1260
2ZJP|1|X|G|1261
2ZJP|1|X|U|1262
2ZJP|1|X|G|1263

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain I

50S RIBOSOMAL PROTEIN L15

Chain N

50S RIBOSOMAL PROTEIN L20