IL_2ZJP_046
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_046 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.2183
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
2ZJP|1|X|A|1275
2ZJP|1|X|U|1276
2ZJP|1|X|G|1277
2ZJP|1|X|A|1278
2ZJP|1|X|G|1279
2ZJP|1|X|U|1280
2ZJP|1|X|A|1281
2ZJP|1|X|A|1282
*
2ZJP|1|X|U|1994
2ZJP|1|X|G|1995
2ZJP|1|X|A|1996
2ZJP|1|X|A|1997
2ZJP|1|X|A|1998
2ZJP|1|X|U|1999
2ZJP|1|X|U|2000
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: